I have noticed in the most recent beta build 7633 that sometimes when I pass through a jump gate my ship and several other ships will all spawn on top of each other when the new sector loads up. I have had up to 4 different ships including my ship all spawn in the exact same spot. Luckily getting free of this hasn't caused to much damage to me or the other ships all caught up but some reputation loss does occur if a block gets knocked off during the process.