It happened some time ago and sins that moment game was broken.
After series of some jumping (5-6 jumps) my ship loses it's ability to jump and go to the gates. And after me exit my savegame get me into another sector in a drone, but not to home sector but to the last one autosaved till jumping. And i always find my ship somewhere close. But when i returned to the sector where i was exiting game previoustly my ship is there! So i have TWO ships how. All modules and crew is CLONED )))) That is some problem...
It starts after once ive dismantled one ship in constructor mode and safe mode was turned off. After that all that started.